IL_9DP7_062

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UCAAC*GGA

Length

8 nucleotides

Bulged bases

9DP7|1|A1|G|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DP7_062 not in the Motif Atlas

Homologous match to IL_9AXU_059

Geometric discrepancy: 0.3135

The information below is about IL_9AXU_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06671.4

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

12

Unit IDs

9DP7|1|A1|U|1501
9DP7|1|A1|C|1502
9DP7|1|A1|A|1503
9DP7|1|A1|A|1504
9DP7|1|A1|C|1505
*
9DP7|1|A1|G|1513
9DP7|1|A1|G|1514
9DP7|1|A1|A|1515

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AP

60S ribosomal protein L17-A

Chain AR

60S ribosomal protein L19-A

Chain Al

60S ribosomal protein L39