IL_9DP7_082

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CGAUGG*UGUUGACG

Length

14 nucleotides

Bulged bases

9DP7|1|A1|U|2159, 9DP7|1|A1|U|2175, 9DP7|1|A1|C|2179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|C|2156
9DP7|1|A1|G|2157
9DP7|1|A1|A|2158
9DP7|1|A1|U|2159
9DP7|1|A1|G|2160
9DP7|1|A1|G|2161
*
9DP7|1|A1|U|2173
9DP7|1|A1|G|2174
9DP7|1|A1|U|2175
9DP7|1|A1|U|2176
9DP7|1|A1|G|2177
9DP7|1|A1|A|2178
9DP7|1|A1|C|2179
9DP7|1|A1|G|2180

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ap

60S ribosomal protein L43-A