IL_9DP7_098

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUGGGAG*CGCCAGUGAAAUACCAC

Length

24 nucleotides

Bulged bases

9DP7|1|A1|A|2491

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|G|2463
9DP7|1|A1|U|2464
9DP7|1|A1|G|2465
9DP7|1|A1|G|2466
9DP7|1|A1|G|2467
9DP7|1|A1|A|2468
9DP7|1|A1|G|2469
*
9DP7|1|A1|C|2476
9DP7|1|A1|G|2477
9DP7|1|A1|C|2478
9DP7|1|A1|C|2479
9DP7|1|A1|A|2480
9DP7|1|A1|G|2481
9DP7|1|A1|U|2482
9DP7|1|A1|G|2483
9DP7|1|A1|A|2484
9DP7|1|A1|A|2485
9DP7|1|A1|A|2486
9DP7|1|A1|U|2487
9DP7|1|A1|A|2488
9DP7|1|A1|C|2489
9DP7|1|A1|C|2490
9DP7|1|A1|A|2491
9DP7|1|A1|C|2492

Current chains

Chain A1

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL1A

Chain EC

TSV IRES RNA