IL_9DP7_100

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

9DP7|1|A1|A|2626

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DP7_100 not in the Motif Atlas

Homologous match to IL_9PN5_094

Geometric discrepancy: 0.0739

The information below is about IL_9PN5_094

Detailed Annotation

AG tHS outside loop

Broad Annotation

AG tHS outside loop

Motif group

IL_14190.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

188

Unit IDs

9DP7|1|A1|G|2614
9DP7|1|A1|G|2615
*
9DP7|1|A1|C|2625
9DP7|1|A1|A|2626
9DP7|1|A1|C|2627

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AI

Large ribosomal subunit protein uL16

Chain AT

60S ribosomal protein L21-A

Chain Ab

Large ribosomal subunit protein eL29

Chain Ao

60S ribosomal protein L42-A