IL_9DP7_102
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_102 not in the Motif Atlas
- Homologous match to IL_9H3G_114
- Geometric discrepancy: 0.1286
- The information below is about IL_9H3G_114
- Detailed Annotation
- Tandem non-canonical cWW pairs with external base triple
- Broad Annotation
- Tandem non-canonical cWW pairs with external base triple
- Motif group
- IL_15225.5
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 42
Unit IDs
9DP7|1|A1|U|2718
9DP7|1|A1|U|2719
9DP7|1|A1|G|2720
9DP7|1|A1|A|2721
*
9DP7|1|A1|U|2735
9DP7|1|A1|A|2736
9DP7|1|A1|C|2737
9DP7|1|A1|A|2738
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AD
- Large ribosomal subunit protein uL18
- Chain AQ
- 60S ribosomal protein L18-A
- Chain AT
- 60S ribosomal protein L21-A
- Chain Ab
- Large ribosomal subunit protein eL29
- Chain Ao
- 60S ribosomal protein L42-A
Coloring options: