IL_9DP7_113

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CAUA*UAAGCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|A1|C|2889
9DP7|1|A1|A|2890
9DP7|1|A1|U|2891
9DP7|1|A1|A|2892
*
9DP7|1|A1|U|2909
9DP7|1|A1|A|2910
9DP7|1|A1|A|2911
9DP7|1|A1|G|2912
9DP7|1|A1|C|2913
9DP7|1|A1|G|2914

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AB

60S ribosomal protein L3

Chain AH

60S ribosomal protein L9-A

Chain AV

60S ribosomal protein L23-A

Chain Am

Ubiquitin-60S ribosomal protein L40