IL_9DP7_130
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- CAACG*UUG
- Length
- 8 nucleotides
- Bulged bases
- 9DP7|1|A1|U|3259
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_130 not in the Motif Atlas
- Homologous match to IL_9PN5_122
- Geometric discrepancy: 0.1792
- The information below is about IL_9PN5_122
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62925.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 4
Unit IDs
9DP7|1|A1|C|3225
9DP7|1|A1|A|3226
9DP7|1|A1|A|3227
9DP7|1|A1|C|3228
9DP7|1|A1|G|3229
*
9DP7|1|A1|U|3258
9DP7|1|A1|U|3259
9DP7|1|A1|G|3260
Current chains
- Chain A1
- 25S rRNA
Nearby chains
- Chain AE
- 60S ribosomal protein L6-A
- Chain AM
- 60S ribosomal protein L14-A
- Chain AO
- 60S ribosomal protein L16-A
- Chain Af
- 60S ribosomal protein L33-A
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