IL_9DP7_145
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UUCCC*GAUCA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9DP7_145 not in the Motif Atlas
- Homologous match to IL_4V9F_104
- Geometric discrepancy: 0.1586
- The information below is about IL_4V9F_104
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.14
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 13
Unit IDs
9DP7|1|A3|U|32
9DP7|1|A3|U|33
9DP7|1|A3|C|34
9DP7|1|A3|C|35
9DP7|1|A3|C|36
*
9DP7|1|A3|G|41
9DP7|1|A3|A|42
9DP7|1|A3|U|43
9DP7|1|A3|C|44
9DP7|1|A3|A|45
Current chains
- Chain A3
- 5S rRNA
Nearby chains
- Chain A1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AD
- Large ribosomal subunit protein uL18
- Chain AJ
- Large ribosomal subunit protein uL5A
Coloring options: