IL_9DP7_183

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GCUAACCUUGA*UCUUGGCGAAC

Length

22 nucleotides

Bulged bases

9DP7|1|B5|A|707, 9DP7|1|B5|C|709, 9DP7|1|B5|U|710, 9DP7|1|B5|U|711, 9DP7|1|B5|G|712, 9DP7|1|B5|C|726, 9DP7|1|B5|U|728, 9DP7|1|B5|G|729, 9DP7|1|B5|C|731, 9DP7|1|B5|G|732, 9DP7|1|B5|A|733, 9DP7|1|B5|A|734

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|G|703
9DP7|1|B5|C|704
9DP7|1|B5|U|705
9DP7|1|B5|A|706
9DP7|1|B5|A|707
9DP7|1|B5|C|708
9DP7|1|B5|C|709
9DP7|1|B5|U|710
9DP7|1|B5|U|711
9DP7|1|B5|G|712
9DP7|1|B5|A|713
*
9DP7|1|B5|U|725
9DP7|1|B5|C|726
9DP7|1|B5|U|727
9DP7|1|B5|U|728
9DP7|1|B5|G|729
9DP7|1|B5|G|730
9DP7|1|B5|C|731
9DP7|1|B5|G|732
9DP7|1|B5|A|733
9DP7|1|B5|A|734
9DP7|1|B5|C|735

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BE

40S ribosomal protein S4-A

Chain BG

40S ribosomal protein S6-A