IL_9DP7_198

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9DP7|1|B5|U|1052

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DP7_198 not in the Motif Atlas

Homologous match to IL_9PN5_193

Geometric discrepancy: 0.3045

The information below is about IL_9PN5_193

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.9

Basepair signature

cWW-L-cWW

Number of instances in this motif group

193

Unit IDs

9DP7|1|B5|G|1051
9DP7|1|B5|U|1052
9DP7|1|B5|G|1053
*
9DP7|1|B5|C|1066
9DP7|1|B5|C|1067

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BA

40S ribosomal protein S0-A

Chain BB

Small ribosomal subunit protein eS1A

Chain BR

40S ribosomal protein S17-A

Chain Bb

40S ribosomal protein S27-A