IL_9DP7_209
3D structure
- PDB id
- 9DP7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.38 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 9DP7|1|B5|C|1274
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9DP7|1|B5|U|1272
9DP7|1|B5|G|1273
9DP7|1|B5|C|1274
9DP7|1|B5|A|1275
9DP7|1|B5|U|1276
*
9DP7|1|B5|A|1436
9DP7|1|B5|U|1437
9DP7|1|B5|G|1438
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BD
- Small ribosomal subunit protein uS3
- Chain BK
- 40S ribosomal protein S10-A
- Chain BU
- Small ribosomal subunit protein uS10
- Chain Bd
- Small ribosomal subunit protein uS14A
- Chain Bf
- RPS31 isoform 1
- Chain EC
- TSV IRES RNA
Coloring options: