IL_9DP7_235

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UGCUUAG*CAGAGCG

Length

14 nucleotides

Bulged bases

9DP7|1|B5|C|1716

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|U|1684
9DP7|1|B5|G|1685
9DP7|1|B5|C|1686
9DP7|1|B5|U|1687
9DP7|1|B5|U|1688
9DP7|1|B5|A|1689
9DP7|1|B5|G|1690
*
9DP7|1|B5|C|1711
9DP7|1|B5|A|1712
9DP7|1|B5|G|1713
9DP7|1|B5|A|1714
9DP7|1|B5|G|1715
9DP7|1|B5|C|1716
9DP7|1|B5|G|1717

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BG

40S ribosomal protein S6-A