IL_9DUL_021

3D structure

PDB id

9DUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9DUL|1|A|U|485

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9DUL_021 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.2218

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9DUL|1|A|G|446
9DUL|1|A|G|447
9DUL|1|A|A|448
9DUL|1|A|G|449
9DUL|1|A|G|450
*
9DUL|1|A|C|483
9DUL|1|A|G|484
9DUL|1|A|U|485
9DUL|1|A|U|486
9DUL|1|A|A|487
9DUL|1|A|C|488

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16