IL_9E5I_004

3D structure

PDB id

9E5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

env2 cobalamin riboswitch aptamer domain in complex with ethynyl-4-nitrobenzene-cobalamin

Experimental method

X-RAY DIFFRACTION

Resolution

1.42 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9E5I|1|B|U|22

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9E5I_004 not in the Motif Atlas

Geometric match to IL_4V9F_074

Geometric discrepancy: 0.3559

The information below is about IL_4V9F_074

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9E5I|1|B|G|21
9E5I|1|B|U|22
9E5I|1|B|G|23
*
9E5I|1|B|C|37
9E5I|1|B|C|38

Current chains

Chain B

RNA (76-MER)

Nearby chains