IL_9EBB_103

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_103 not in the Motif Atlas

Homologous match to IL_7A0S_085

Geometric discrepancy: 0.1297

The information below is about IL_7A0S_085

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9EBB|1|I|U|2695
9EBB|1|I|G|2696
9EBB|1|I|A|2697
*
9EBB|1|I|U|2731
9EBB|1|I|G|2732

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 7

50S ribosomal protein bL37

Chain M

50S ribosomal protein L16