IL_9EBB_114

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCUCU*ACG

Length

8 nucleotides

Bulged bases

9EBB|1|I|C|2964

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_114 not in the Motif Atlas

Homologous match to IL_8B0X_162

Geometric discrepancy: 0.1221

The information below is about IL_8B0X_162

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_63596.14

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

22

Unit IDs

9EBB|1|I|C|2918
9EBB|1|I|C|2919
9EBB|1|I|U|2920
9EBB|1|I|C|2921
9EBB|1|I|U|2922
*
9EBB|1|I|A|2963
9EBB|1|I|C|2964
9EBB|1|I|G|2965

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

Large ribosomal subunit protein uL14

Chain P

50S ribosomal protein L19