IL_9EBB_149

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UA*UAA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_149 not in the Motif Atlas

Geometric match to IL_5Y85_005

Geometric discrepancy: 0.1711

The information below is about IL_5Y85_005

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9EBB|1|a|U|648
9EBB|1|a|A|649
*
9EBB|1|a|U|738
9EBB|1|a|A|739
9EBB|1|a|A|740

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain o

30S ribosomal protein S15