IL_9EBB_154

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_154 not in the Motif Atlas

Homologous match to IL_8B0X_036

Geometric discrepancy: 0.0731

The information below is about IL_8B0X_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05821.3

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9EBB|1|a|C|770
9EBB|1|a|G|771
9EBB|1|a|A|772
9EBB|1|a|A|773
9EBB|1|a|C|774
*
9EBB|1|a|G|790
9EBB|1|a|G|791
9EBB|1|a|U|792
9EBB|1|a|A|793
9EBB|1|a|G|794

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain I

Large subunit ribosomal RNA; LSU rRNA

Chain k

30S ribosomal protein S11