IL_9EBB_176

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUG*UUAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_176 not in the Motif Atlas

Geometric match to IL_9H3G_004

Geometric discrepancy: 0.2587

The information below is about IL_9H3G_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87767.4

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9EBB|1|a|C|1251
9EBB|1|a|G|1252
9EBB|1|a|A|1253
9EBB|1|a|U|1254
9EBB|1|a|G|1255
*
9EBB|1|a|U|1264
9EBB|1|a|U|1265
9EBB|1|a|A|1266
9EBB|1|a|A|1267
9EBB|1|a|G|1268

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain 9

Small ribosomal subunit protein uS14