IL_9EBB_178

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9EBB|1|a|C|1393, 9EBB|1|a|A|1496

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBB_178 not in the Motif Atlas

Homologous match to IL_8B0X_057

Geometric discrepancy: 0.1331

The information below is about IL_8B0X_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_18228.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

9EBB|1|a|C|1392
9EBB|1|a|C|1393
9EBB|1|a|G|1394
*
9EBB|1|a|C|1494
9EBB|1|a|A|1495
9EBB|1|a|A|1496
9EBB|1|a|G|1497

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain A

Ribosome hibernation promoting factor

Chain x

Mitochondrial domain of uncharacterized function (DUF1713)