IL_9EBV_002

3D structure

PDB id

9EBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome

Experimental method

X-RAY DIFFRACTION

Resolution

2.519 Å

Loop

Sequence

CUU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EBV_002 not in the Motif Atlas

Geometric match to IL_8GLP_231

Geometric discrepancy: 0.0739

The information below is about IL_8GLP_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

9EBV|1|M|C|53
9EBV|1|M|U|54
9EBV|1|M|U|55
*
9EBV|1|M|A|68
9EBV|1|M|U|69
9EBV|1|M|G|70

Current chains

Chain M

RNA (81-MER)

Nearby chains

Chain A

azaaromatic riboswitch aptamer (yjdF RNA)