IL_9EC3_012

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GGAAGUG*CUCAGUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_012 not in the Motif Atlas

Homologous match to IL_8B0X_070

Geometric discrepancy: 0.1032

The information below is about IL_8B0X_070

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9EC3|1|I|G|190
9EC3|1|I|G|191
9EC3|1|I|A|192
9EC3|1|I|A|193
9EC3|1|I|G|194
9EC3|1|I|U|195
9EC3|1|I|G|196
*
9EC3|1|I|C|203
9EC3|1|I|U|204
9EC3|1|I|C|205
9EC3|1|I|A|206
9EC3|1|I|G|207
9EC3|1|I|U|208
9EC3|1|I|A|209
9EC3|1|I|C|210

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15

Chain y

Large ribosomal subunit protein bL28