IL_9EC3_040

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

9EC3|1|I|A|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_040 not in the Motif Atlas

Homologous match to IL_8B0X_097

Geometric discrepancy: 0.1485

The information below is about IL_8B0X_097

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.3

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

24

Unit IDs

9EC3|1|I|C|1127
9EC3|1|I|U|1128
9EC3|1|I|A|1129
9EC3|1|I|A|1130
9EC3|1|I|G|1131
*
9EC3|1|I|C|1283
9EC3|1|I|G|1284
9EC3|1|I|A|1285
9EC3|1|I|A|1286
9EC3|1|I|G|1287

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain Q

50S ribosomal protein L20

Chain R

Large ribosomal subunit protein bL21

Chain Z

50S ribosomal protein L30