IL_9EC3_083

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_083 not in the Motif Atlas

Geometric match to IL_7A0S_071

Geometric discrepancy: 0.1442

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_24886.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

13

Unit IDs

9EC3|1|I|G|2171
9EC3|1|I|C|2172
*
9EC3|1|I|G|2202
9EC3|1|I|C|2203
9EC3|1|I|A|2204
9EC3|1|I|C|2205

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain u

Transfer RNA; tRNA

Chain x

Mitochondrial domain of uncharacterized function (DUF1713)