IL_9EC3_115

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CGU*GACG

Length

7 nucleotides

Bulged bases

9EC3|1|a|A|396

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_115 not in the Motif Atlas

Geometric match to IL_7A0S_092

Geometric discrepancy: 0.2658

The information below is about IL_7A0S_092

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_55553.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

6

Unit IDs

9EC3|1|a|C|46
9EC3|1|a|G|47
9EC3|1|a|U|48
*
9EC3|1|a|G|395
9EC3|1|a|A|396
9EC3|1|a|C|397
9EC3|1|a|G|398

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain d

30S ribosomal protein S4

Chain p

30S ribosomal protein S16