IL_9EC3_123

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUGCC*GAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EC3_123 not in the Motif Atlas

Homologous match to IL_8B0X_010

Geometric discrepancy: 0.2379

The information below is about IL_8B0X_010

Detailed Annotation

Minor groove platform related

Broad Annotation

Minor groove platform related

Motif group

IL_60988.4

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

9EC3|1|a|C|128
9EC3|1|a|U|129
9EC3|1|a|G|130
9EC3|1|a|C|131
9EC3|1|a|C|132
*
9EC3|1|a|G|226
9EC3|1|a|A|227
9EC3|1|a|U|228
9EC3|1|a|G|229

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain q

30S ribosomal protein S17

Chain t

30S ribosomal protein S20