IL_9EC3_125
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- UAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 9EC3|1|a|U|243, 9EC3|1|a|C|279
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EC3_125 not in the Motif Atlas
- Homologous match to IL_8B0X_013
- Geometric discrepancy: 0.1763
- The information below is about IL_8B0X_013
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.6
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9EC3|1|a|U|241
9EC3|1|a|A|242
9EC3|1|a|U|243
9EC3|1|a|C|244
9EC3|1|a|A|245
9EC3|1|a|G|246
*
9EC3|1|a|C|276
9EC3|1|a|G|277
9EC3|1|a|A|278
9EC3|1|a|C|279
9EC3|1|a|G|280
9EC3|1|a|A|281
9EC3|1|a|C|282
9EC3|1|a|G|283
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain q
- 30S ribosomal protein S17
Coloring options: