IL_9EC3_148
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GGAGUACG*UAAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EC3_148 not in the Motif Atlas
- Homologous match to IL_8B0X_037
- Geometric discrepancy: 0.0885
- The information below is about IL_8B0X_037
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_84044.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 6
Unit IDs
9EC3|1|a|G|880
9EC3|1|a|G|881
9EC3|1|a|A|882
9EC3|1|a|G|883
9EC3|1|a|U|884
9EC3|1|a|A|885
9EC3|1|a|C|886
9EC3|1|a|G|887
*
9EC3|1|a|U|898
9EC3|1|a|A|899
9EC3|1|a|A|900
9EC3|1|a|A|901
9EC3|1|a|A|902
9EC3|1|a|C|903
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain x
- Mitochondrial domain of uncharacterized function (DUF1713)
Coloring options: