IL_9EDA_002

3D structure

PDB id

9EDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

SpCas9 with 17-bp R-loop containing 2 terminal mismatches (State IV - product)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

9EDA|1|B|U|59

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EDA_002 not in the Motif Atlas

Geometric match to IL_7QR8_002

Geometric discrepancy: 0.1203

The information below is about IL_7QR8_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9EDA|1|B|G|54
9EDA|1|B|C|55
*
9EDA|1|B|G|58
9EDA|1|B|U|59
9EDA|1|B|C|60

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9/Csn1