IL_9EHO_001

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

9EHO|1|8|A|155

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_001 not in the Motif Atlas

Homologous match to IL_9PN5_001

Geometric discrepancy: 0.2101

The information below is about IL_9PN5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

9EHO|1|5|C|6
9EHO|1|5|C|7
*
9EHO|1|8|G|154
9EHO|1|8|A|155
9EHO|1|8|G|156

Current chains

Chain 5

28S rRNA

Chain 8

5.8S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15

Chain X

Large ribosomal subunit protein uL23 N-terminal domain-containing protein