IL_9EHO_008

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AU*AGCUGU

Length

8 nucleotides

Bulged bases

9EHO|1|5|U|151

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_008 not in the Motif Atlas

Homologous match to IL_9AXU_006

Geometric discrepancy: 0.1347

The information below is about IL_9AXU_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_10396.3

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

8

Unit IDs

9EHO|1|5|A|121
9EHO|1|5|U|122
*
9EHO|1|5|A|148
9EHO|1|5|G|149
9EHO|1|5|C|150
9EHO|1|5|U|151
9EHO|1|5|G|152
9EHO|1|5|U|153

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15