IL_9EHO_012

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9EHO|1|5|U|203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_012 not in the Motif Atlas

Homologous match to IL_8GLP_016

Geometric discrepancy: 0.1515

The information below is about IL_8GLP_016

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9EHO|1|5|G|202
9EHO|1|5|U|203
9EHO|1|5|C|204
*
9EHO|1|5|G|217
9EHO|1|5|C|218

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4 C-terminal domain-containing protein

Chain Y

Large ribosomal subunit protein uL24