IL_9EHO_016
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGAAAC*GGGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_016 not in the Motif Atlas
- Homologous match to IL_8GLP_021
- Geometric discrepancy: 0.0993
- The information below is about IL_8GLP_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_22311.3
- Basepair signature
- cWW-cWW-tSH-tHS-tHS-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
9EHO|1|5|G|422
9EHO|1|5|U|423
9EHO|1|5|G|424
9EHO|1|5|A|425
9EHO|1|5|A|426
9EHO|1|5|A|427
9EHO|1|5|C|428
*
9EHO|1|8|G|12
9EHO|1|8|G|13
9EHO|1|8|G|14
9EHO|1|8|G|15
9EHO|1|8|A|16
9EHO|1|8|U|17
9EHO|1|8|C|18
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain P
- Large ribosomal subunit protein uL22
- Chain e
- 60S ribosomal protein L32
Coloring options: