IL_9EHO_034

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAG*CGCCCGAAAAG

Length

14 nucleotides

Bulged bases

9EHO|1|5|G|986

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|C|944
9EHO|1|5|A|945
9EHO|1|5|G|946
*
9EHO|1|5|C|981
9EHO|1|5|G|982
9EHO|1|5|C|983
9EHO|1|5|C|984
9EHO|1|5|C|985
9EHO|1|5|G|986
9EHO|1|5|A|987
9EHO|1|5|A|988
9EHO|1|5|A|989
9EHO|1|5|A|990
9EHO|1|5|G|991

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4 C-terminal domain-containing protein

Chain E

Large ribosomal subunit protein eL6

Chain F

60S ribosomal protein L7 isoform X1