IL_9EHO_035
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAG*CCG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_035 not in the Motif Atlas
- Geometric match to IL_9E6Q_036
- Geometric discrepancy: 0.108
- The information below is about IL_9E6Q_036
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9EHO|1|5|C|1067
9EHO|1|5|A|1068
9EHO|1|5|G|1069
*
9EHO|1|5|C|1365
9EHO|1|5|C|1366
9EHO|1|5|G|1367
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- Ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain a
- Large ribosomal subunit protein uL15
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