IL_9EHO_036
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAC*GGC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_036 not in the Motif Atlas
- Geometric match to IL_9PN5_162
- Geometric discrepancy: 0.1711
- The information below is about IL_9PN5_162
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.4
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 62
Unit IDs
9EHO|1|5|G|1072
9EHO|1|5|A|1073
9EHO|1|5|C|1074
*
9EHO|1|5|G|1360
9EHO|1|5|G|1361
9EHO|1|5|C|1362
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain N
- Ribosomal protein L15
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain a
- Large ribosomal subunit protein uL15
Coloring options: