IL_9EHO_041
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 9EHO|1|5|A|1503, 9EHO|1|5|G|1507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_041 not in the Motif Atlas
- Homologous match to IL_9PN5_027
- Geometric discrepancy: 0.0741
- The information below is about IL_9PN5_027
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_73855.3
- Basepair signature
- cWW-L-R-L-R-tWH-L-cWW
- Number of instances in this motif group
- 11
Unit IDs
9EHO|1|5|G|1375
9EHO|1|5|A|1376
9EHO|1|5|A|1377
9EHO|1|5|A|1378
9EHO|1|5|G|1379
*
9EHO|1|5|C|1501
9EHO|1|5|U|1502
9EHO|1|5|A|1503
9EHO|1|5|G|1504
9EHO|1|5|U|1505
9EHO|1|5|A|1506
9EHO|1|5|G|1507
9EHO|1|5|C|1508
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain L
- Large ribosomal subunit protein eL13
- Chain N
- Ribosomal protein L15
- Chain a
- Large ribosomal subunit protein uL15
- Chain j
- Ribosomal protein L37
Coloring options: