IL_9EHO_045
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGG*CAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9EHO|1|5|G|1478, 9EHO|1|5|A|1490, 9EHO|1|5|A|1491
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_045 not in the Motif Atlas
- Homologous match to IL_8GLP_062
- Geometric discrepancy: 0.1117
- The information below is about IL_8GLP_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_89509.3
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
9EHO|1|5|G|1477
9EHO|1|5|G|1478
9EHO|1|5|G|1479
*
9EHO|1|5|C|1489
9EHO|1|5|A|1490
9EHO|1|5|A|1491
9EHO|1|5|U|1492
9EHO|1|5|C|1493
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Large ribosomal subunit protein uL2
- Chain N
- Ribosomal protein L15
- Chain P
- Large ribosomal subunit protein uL22
- Chain j
- Ribosomal protein L37
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