IL_9EHO_048
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAGCAGGAGAACGACACG*CACG
- Length
- 22 nucleotides
- Bulged bases
- 9EHO|1|5|G|1552, 9EHO|1|5|A|1553, 9EHO|1|5|A|1555, 9EHO|1|5|C|1562, 9EHO|1|5|A|1744, 9EHO|1|5|C|1745
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|1546
9EHO|1|5|A|1547
9EHO|1|5|G|1548
9EHO|1|5|C|1549
9EHO|1|5|A|1550
9EHO|1|5|G|1551
9EHO|1|5|G|1552
9EHO|1|5|A|1553
9EHO|1|5|G|1554
9EHO|1|5|A|1555
9EHO|1|5|A|1556
9EHO|1|5|C|1557
9EHO|1|5|G|1558
9EHO|1|5|A|1559
9EHO|1|5|C|1560
9EHO|1|5|A|1561
9EHO|1|5|C|1562
9EHO|1|5|G|1563
*
9EHO|1|5|C|1743
9EHO|1|5|A|1744
9EHO|1|5|C|1745
9EHO|1|5|G|1746
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain F
- 60S ribosomal protein L7 isoform X1
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain b
- 60S ribosomal protein L29
Coloring options: