IL_9EHO_051
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCGAAC*GAAC
- Length
- 10 nucleotides
- Bulged bases
- 9EHO|1|5|G|1583
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_051 not in the Motif Atlas
- Homologous match to IL_9H3G_046
- Geometric discrepancy: 0.1474
- The information below is about IL_9H3G_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_16301.3
- Basepair signature
- cWW-cWS-tWH-R-L-R-cWW
- Number of instances in this motif group
- 10
Unit IDs
9EHO|1|5|G|1581
9EHO|1|5|C|1582
9EHO|1|5|G|1583
9EHO|1|5|A|1584
9EHO|1|5|A|1585
9EHO|1|5|C|1586
*
9EHO|1|5|G|1629
9EHO|1|5|A|1630
9EHO|1|5|A|1631
9EHO|1|5|C|1632
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein
- Chain I
- Large ribosomal subunit protein uL16
- Chain T
- 60S ribosomal protein L21
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