IL_9EHO_055

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUC*GG

Length

5 nucleotides

Bulged bases

9EHO|1|5|U|1669

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_055 not in the Motif Atlas

Geometric match to IL_6JQ6_006

Geometric discrepancy: 0.1895

The information below is about IL_6JQ6_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

173

Unit IDs

9EHO|1|5|C|1668
9EHO|1|5|U|1669
9EHO|1|5|C|1670
*
9EHO|1|5|G|1677
9EHO|1|5|G|1678

Current chains

Chain 5

28S rRNA

Nearby chains

Chain D

Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein

Chain T

60S ribosomal protein L21

Chain b

60S ribosomal protein L29