IL_9EHO_062
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAUCCCCGAAAG*CGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9EHO|1|5|U|1837, 9EHO|1|5|A|1943, 9EHO|1|5|U|1946, 9EHO|1|5|G|1947
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|1835
9EHO|1|5|A|1836
9EHO|1|5|U|1837
9EHO|1|5|C|1838
9EHO|1|5|C|1839
9EHO|1|5|C|1840
9EHO|1|5|C|1841
9EHO|1|5|G|1842
9EHO|1|5|A|1843
9EHO|1|5|A|1844
9EHO|1|5|A|1845
9EHO|1|5|G|1846
*
9EHO|1|5|C|1940
9EHO|1|5|G|1941
9EHO|1|5|A|1942
9EHO|1|5|A|1943
9EHO|1|5|A|1944
9EHO|1|5|A|1945
9EHO|1|5|U|1946
9EHO|1|5|G|1947
9EHO|1|5|G|1948
9EHO|1|5|A|1949
9EHO|1|5|U|1950
9EHO|1|5|G|1951
9EHO|1|5|G|1952
9EHO|1|5|C|1953
9EHO|1|5|G|1954
9EHO|1|5|C|1955
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain B
- 60S ribosomal protein L3
- Chain I
- Large ribosomal subunit protein uL16
- Chain O
- Large ribosomal subunit protein uL13
- Chain f
- Large ribosomal subunit protein eL33
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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