IL_9EHO_063
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUG*CC
- Length
- 5 nucleotides
- Bulged bases
- 9EHO|1|5|U|1849
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_063 not in the Motif Atlas
- Homologous match to IL_8GLP_081
- Geometric discrepancy: 0.0984
- The information below is about IL_8GLP_081
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_97561.7
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 173
Unit IDs
9EHO|1|5|G|1848
9EHO|1|5|U|1849
9EHO|1|5|G|1850
*
9EHO|1|5|C|1937
9EHO|1|5|C|1938
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain H
- Large ribosomal subunit protein uL6
- Chain S
- 60S ribosomal protein L18a
- Chain m
- Ubiquitin-ribosomal protein eL40 fusion protein
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