IL_9EHO_065

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GC*GAC

Length

5 nucleotides

Bulged bases

9EHO|1|5|A|2093

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_065 not in the Motif Atlas

Geometric match to IL_3B31_001

Geometric discrepancy: 0.2461

The information below is about IL_3B31_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9EHO|1|5|G|2053
9EHO|1|5|C|2054
*
9EHO|1|5|G|2092
9EHO|1|5|A|2093
9EHO|1|5|C|2094

Current chains

Chain 5

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4 C-terminal domain-containing protein

Chain e

60S ribosomal protein L32

Chain r

Large ribosomal subunit protein eL28