IL_9EHO_066

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9EHO|1|5|U|2056

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_066 not in the Motif Atlas

Homologous match to IL_8GLP_085

Geometric discrepancy: 0.3014

The information below is about IL_8GLP_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9EHO|1|5|G|2055
9EHO|1|5|U|2056
9EHO|1|5|G|2057
*
9EHO|1|5|C|2090
9EHO|1|5|C|2091

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

Large ribosomal subunit protein uL4 C-terminal domain-containing protein

Chain e

60S ribosomal protein L32

Chain r

Large ribosomal subunit protein eL28