IL_9EHO_067
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGGAAG*UGAAG
- Length
- 13 nucleotides
- Bulged bases
- 9EHO|1|5|G|2061
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_067 not in the Motif Atlas
- Homologous match to IL_8GLP_086
- Geometric discrepancy: 0.0784
- The information below is about IL_8GLP_086
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90775.3
- Basepair signature
- cWW-tSS-tSH-L-tHS-tHS-cWW
- Number of instances in this motif group
- 30
Unit IDs
9EHO|1|5|C|2058
9EHO|1|5|A|2059
9EHO|1|5|U|2060
9EHO|1|5|G|2061
9EHO|1|5|G|2062
9EHO|1|5|A|2063
9EHO|1|5|A|2064
9EHO|1|5|G|2065
*
9EHO|1|5|U|2085
9EHO|1|5|G|2086
9EHO|1|5|A|2087
9EHO|1|5|A|2088
9EHO|1|5|G|2089
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain Y
- Large ribosomal subunit protein uL24
- Chain e
- 60S ribosomal protein L32
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