IL_9EHO_068

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9EHO_068 not in the Motif Atlas

Geometric match to IL_3OXE_003

Geometric discrepancy: 0.0862

The information below is about IL_3OXE_003

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.10

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

43

Unit IDs

9EHO|1|5|C|2067
9EHO|1|5|G|2068
9EHO|1|5|C|2069
*
9EHO|1|5|G|2082
9EHO|1|5|G|2083

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain e

60S ribosomal protein L32