IL_9EHO_074
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUC*GAG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_074 not in the Motif Atlas
- Geometric match to IL_3SJ2_001
- Geometric discrepancy: 0.1633
- The information below is about IL_3SJ2_001
- Detailed Annotation
- Isolated cWH basepair
- Broad Annotation
- No text annotation
- Motif group
- IL_10892.4
- Basepair signature
- cWW-cHW-cWW
- Number of instances in this motif group
- 62
Unit IDs
9EHO|1|5|C|2337
9EHO|1|5|U|2338
9EHO|1|5|C|2339
*
9EHO|1|5|G|2622
9EHO|1|5|A|2623
9EHO|1|5|G|2624
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain g
- Large ribosomal subunit protein eL34
- Chain k
- eL38
Coloring options: