IL_9EHO_088
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GCU*AAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_088 not in the Motif Atlas
- Homologous match to IL_8GLP_109
- Geometric discrepancy: 0.077
- The information below is about IL_8GLP_109
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9EHO|1|5|G|2741
9EHO|1|5|C|2742
9EHO|1|5|U|2743
*
9EHO|1|5|A|3421
9EHO|1|5|A|3422
9EHO|1|5|C|3423
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain JJ
- 40S ribosomal protein S8
- Chain R
- Ribosomal protein L19
Coloring options: