IL_9EHO_103
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GUC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9EHO_103 not in the Motif Atlas
- Homologous match to IL_9H3G_105
- Geometric discrepancy: 0.1916
- The information below is about IL_9H3G_105
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.6
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 241
Unit IDs
9EHO|1|5|G|3740
9EHO|1|5|U|3741
9EHO|1|5|C|3742
*
9EHO|1|5|G|4135
9EHO|1|5|U|4136
9EHO|1|5|C|4137
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain A
- Large ribosomal subunit protein uL2
- Chain N
- Ribosomal protein L15
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